Problem with flashing CyanogenMod 13 builds through TWRP 2.8

I'm facing problem with flashing CyanogenMod 13 builds through TWRP 2.8 recovery when SD card is being used as internal storage, TWRP recovery is not able to locate SD card storage when SD card is being used as internal storage in CM 13, but I did change some settings I can't remember and fortunately TWRP started showing SD card storage but I am not able to flash anything. However, I recently updated my TWRP recovery and installed version 3.0.1. I want to ask, can I now flash CyanogenMod 13 build through new version of TWRP recovery even when my SD card is being used as internal storage? If anyone did this please let me know.

Thanks in advance

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